Changelog¶
All notable changes to this project will be documented in this file.
The format is based on Keep a Changelog and this project adheres to Semantic Versioning.
Unreleased¶
v0.3.2 - 2023-04-01¶
Added¶
Peptide.svger_descriptors
to compute SVGER descriptors from Tong et al. (2016).
Fixed¶
Peptide.physical_descriptors
not being computed byPeptide.descriptors
.
Documentation¶
Refactor documentation of individual descriptors into their own class.
Add missing
PCPDescriptors
andPhysicalDescriptors
to the API documentation.
v0.3.1 - 2022-09-01¶
Fixed¶
peptides.datasets
data files missing from the source distribution.
v0.3.0 - 2022-09-01¶
Added¶
Peptide.linker_preference_profile
to build a profile like used in the DomCut method from Suyama & Ohara (2002).Peptide.profile
to build a generic per-residue profile from a data table (#3).
v0.2.1 - 2022-02-05¶
Fixed¶
Peptide.hydrophobic_moment
not working properly on sequences smaller than the provided window length (#1).
v0.2.0 - 2021-10-21¶
Added¶
Peptide.counts
method to get the number of occurences of each amino acid in the peptide.Peptide.frequencies
to get the frequencies of each amino acid in the peptide.Peptide.pcp_descriptors
to compute the PCP descriptors from Mathura & Braun (2001).Peptide.sneath_vectors
to compute the descriptors from Sneath (1966).Hydrophilicity descriptors from Barley (2018).
Peptide.structural_class
to predict the structural class of a protein using one of three reference datasets and one of four distance metrics.
Changed¶
Peptide.aliphatic_index
now supports unknown Leu/Ile residue (code J).Swap order of
Peptide.hydrophobic_moment
arguments for consistency with profile methods.Some
Peptide
functions now support vectorized code usingnumpy
if available.
v0.1.0 - 2021-10-21¶
Initial release.